prikaz prve stranice dokumenta Alat za mapiranje podataka dobivenih RNA sekvenciranjem
No public access
master's thesis
Alat za mapiranje podataka dobivenih RNA sekvenciranjem
2014. urn:nbn:hr:168:238102
Jerković, Igor
University of Zagreb
Faculty of Electrical Engineering and Computing

Cite this document

Jerković, I. (2014). Alat za mapiranje podataka dobivenih RNA sekvenciranjem (Master's thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:238102

Jerković, Igor. "Alat za mapiranje podataka dobivenih RNA sekvenciranjem." Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2014. https://urn.nsk.hr/urn:nbn:hr:168:238102

Jerković, Igor. "Alat za mapiranje podataka dobivenih RNA sekvenciranjem." Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2014. https://urn.nsk.hr/urn:nbn:hr:168:238102

Jerković, I. (2014). 'Alat za mapiranje podataka dobivenih RNA sekvenciranjem', Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 25 November 2024, https://urn.nsk.hr/urn:nbn:hr:168:238102

Jerković I. Alat za mapiranje podataka dobivenih RNA sekvenciranjem [Master's thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2014 [cited 2024 November 25] Available at: https://urn.nsk.hr/urn:nbn:hr:168:238102

I. Jerković, "Alat za mapiranje podataka dobivenih RNA sekvenciranjem", Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2014. Available at: https://urn.nsk.hr/urn:nbn:hr:168:238102

Please login to the repository to save this object to your list.
Metadata
TitleAlat za mapiranje podataka dobivenih RNA sekvenciranjem
Title (english)RNA-seq mapper
AuthorIgor Jerković
MentorMile Šikić (mentor)
Committee memberMile Šikić (predsjednik povjerenstva)
Committee memberMladen Vučić (član povjerenstva)
Committee memberDamir Seršić (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2014-07-07, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
RNA sekvenciranje je metoda za analizu transkriptoma. Razumijevanje transkriptoma je izuzetno važno iz nekoliko razloga kao što su shvaćanje funkcionalnih elemenata genoma i razumijevanje razvoja pojedinih bolesti, što je samo par od mnogih mogućnosti primjene. Ovaj rad prikazuje novi algoritam za mapiranje podataka dobivenih RNA sekvenciranjem, posebice za očitanja koja se prostiru preko više eksoma. Usporedba sa trenutno najhvaljenijim i najboljim sličnim alatima kao što su Tophat i BBMap prikazana je u radu.
Abstract (english)
RNA sequencing is a method for transcriptome analysis. Understanding the transcriptome is essential for various reasons such as interpreting the functional elements of the genome and undrestanding development of diseases, among many other use cases. This thesis presents a new RNA-seq spliced alignment algorithm, that uses finding the longest increasing subsequence in detecting splice sites and mapping spliced reads across exon junctions. Comparison between some of the state-of-the-art tools such as Tophat and BBMap are given.
Keywords
Keywords (english)
Languageenglish
URN:NBNurn:nbn:hr:168:238102
Study programmeTitle: Computing
Study programme type: university
Study level: graduate
Academic / professional title: magistar/magistra inženjer/inženjerka računarstva (magistar/magistra inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
Access conditionsClosed access
Terms of useLicence In copyright icon
Public note
Created on2018-02-06 09:26:46