Vizualizacija podataka dobivenih sekvenciranjem RNA

undergraduate thesis

• Title (english): RNA Sequencing Data Visualisation
• Author: Jan Vrlec
• Mentor: Krešimir Križanović (mentor)
• Committee member: Krešimir Križanović (predsjednik povjerenstva)
• Committee member: Mile Šikić (član povjerenstva)
• Committee member: Josip Marić (član povjerenstva)
• Granter: University of Zagreb; Faculty of Electrical Engineering and Computing; Zagreb
• Defense date and country: 2020-08-24, Croatia
• Scientific / art field, discipline and subdiscipline: TECHNICAL SCIENCES; Computing

Abstract

Ovaj rad sadrži osnovnu bioinformatičku pozadinu elemenata i procesa koji su povezani sa sekvenciranjem RNA. Nadalje, govori se o samom procesu sekvenciranja i procesima mapiranja i poravnanja koji slijede nakon sekvenciranja.
Obrađuju se tipovi datoteka koji su dobiveni uz pomoć navedenih procesa. Za svaki tip se objašnjava format datoteke i što podatci unutar nje predstavljaju. Spominju se alati Mininap2 i Samtools koji služe za rad s navedenim datotekama.
Na kraju se govori o razvijenoj aplikaciji. Spominju se opće informacije vezane za razvoj aplikacije. Slikama se prikazuje izgled aplikacije, kao i njeni elementi. Svaki element je još dodatno opisan.

Abstract (english)

This paper contains the basic bioinformatic background of elements and processes associated with RNA sequencing. Furthermore, it talks about the sequencing process itself and the processes of mapping and alignment that follow.
The information about file types obtained using the aforementioned processes are also contained in this paper. For each file type, the file format and the representation of data within it is explained. Mention is made of the Minimap2 and Samtools tools used to work with the specified files.
Lastly, the paper contains information about the developed application. General information related to the development of the application is mentioned. The appearance of the application is shown, as well as it's elements. Each element is further described.

• Keywords: RNA; vizualizacija; bioinformatika; sekvenciranje; mapiranje; poravnanje
• Keywords (english): RNA; visualization; bioinformatics; sequencing; mapping; alignment
• Language: croatian
• URN:NBN: urn:nbn:hr:168:675476
• Study programme: Title: Computing; Study programme type: university; Study level: undergraduate; Academic / professional title: sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva (sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva)
• Type of resource: Text
• File origin: Born digital
• Access conditions: Closed access
• Created on: 2023-01-13 14:14:05