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master's thesis
Analiza metagenomskog uzorka dobivenog sekvenciranjem tehnologijom nanopora u realnom vremenu
2016. urn:nbn:hr:168:425001
Vujević, Ivan
University of Zagreb
Faculty of Electrical Engineering and Computing

Cite this document

Vujević, I. (2016). Analiza metagenomskog uzorka dobivenog sekvenciranjem tehnologijom nanopora u realnom vremenu (Master's thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:425001

Vujević, Ivan. "Analiza metagenomskog uzorka dobivenog sekvenciranjem tehnologijom nanopora u realnom vremenu." Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. https://urn.nsk.hr/urn:nbn:hr:168:425001

Vujević, Ivan. "Analiza metagenomskog uzorka dobivenog sekvenciranjem tehnologijom nanopora u realnom vremenu." Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. https://urn.nsk.hr/urn:nbn:hr:168:425001

Vujević, I. (2016). 'Analiza metagenomskog uzorka dobivenog sekvenciranjem tehnologijom nanopora u realnom vremenu', Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 14 November 2024, https://urn.nsk.hr/urn:nbn:hr:168:425001

Vujević I. Analiza metagenomskog uzorka dobivenog sekvenciranjem tehnologijom nanopora u realnom vremenu [Master's thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2016 [cited 2024 November 14] Available at: https://urn.nsk.hr/urn:nbn:hr:168:425001

I. Vujević, "Analiza metagenomskog uzorka dobivenog sekvenciranjem tehnologijom nanopora u realnom vremenu", Master's thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2016. Available at: https://urn.nsk.hr/urn:nbn:hr:168:425001

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Metadata
TitleAnaliza metagenomskog uzorka dobivenog sekvenciranjem tehnologijom nanopora u realnom vremenu
Title (english)Real-TimeAnalysis of a Metagenomic Sample Obtained by Nanopore Based Sequencing Technology
AuthorIvan Vujević
MentorMile Šikić (mentor)
Committee memberMile Šikić (predsjednik povjerenstva)
Committee memberDamir Seršić (član povjerenstva)
Committee memberAna Sović Kržić (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2016-07-05, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
Brza i jeftina analiza metagenomoskog uzorka može biti korisna za dijagnostiku bolesti, kontrolu kvalitete hrane i utvrđivanje štetnih nametnika na biljkama. Tradicionalne laboratorijske metode su ili dugotrajne ili namijenjene za samo jednu vrstu. Uređaji za sekvenciranje MinION tvrtke Oxford Nanopore Technologies relativno su jeftini i pogodni za rad na terenu jer su lako prenosivi. Napravljen je alat koji u prvom koraku pronalazi sve organizme čije sekvence u svom dijelu imaju veliku sličnost s očitanim uzorcima, a nakon toga se utvrđuje koji organizmi su stvarno prisutni u tom uzorku.
Abstract (english)
Fast and cheap metagenomic sample analysis could be very useful for medical diagnosis, food quality control and discovering harmful parasites on plants. Traditional laboratory methods are either long-lasting or oriented towards a single pathogen species. MinION sequencing devices by Oxford Nanopore Technologies are relatively cheap and suitable for application in the field. We developed a tool which in the first step discovers all organisms whose sequence have high similarity to the reads obtained from the samples and after that determines the organisms present in the sample.
Keywords
Keywords (english)
Languageenglish
URN:NBNurn:nbn:hr:168:425001
Study programmeTitle: Computing
Study programme type: university
Study level: graduate
Academic / professional title: magistar/magistra inženjer/inženjerka računarstva (magistar/magistra inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
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Created on2018-02-06 14:26:16