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undergraduate thesis
Poravnanje RNA očitanja na poznate gene
2016. urn:nbn:hr:168:396403
Krpelnik, Ivan
University of Zagreb
Faculty of Electrical Engineering and Computing

Cite this document

Krpelnik, I. (2016). Poravnanje RNA očitanja na poznate gene (Undergraduate thesis). Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing. Retrieved from https://urn.nsk.hr/urn:nbn:hr:168:396403

Krpelnik, Ivan. "Poravnanje RNA očitanja na poznate gene." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. https://urn.nsk.hr/urn:nbn:hr:168:396403

Krpelnik, Ivan. "Poravnanje RNA očitanja na poznate gene." Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, 2016. https://urn.nsk.hr/urn:nbn:hr:168:396403

Krpelnik, I. (2016). 'Poravnanje RNA očitanja na poznate gene', Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, accessed 11 April 2024, https://urn.nsk.hr/urn:nbn:hr:168:396403

Krpelnik I. Poravnanje RNA očitanja na poznate gene [Undergraduate thesis]. Zagreb: University of Zagreb, Faculty of Electrical Engineering and Computing; 2016 [cited 2024 April 11] Available at: https://urn.nsk.hr/urn:nbn:hr:168:396403

I. Krpelnik, "Poravnanje RNA očitanja na poznate gene", Undergraduate thesis, University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, 2016. Available at: https://urn.nsk.hr/urn:nbn:hr:168:396403

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Metadata
TitlePoravnanje RNA očitanja na poznate gene
Title (english)RNA-seq alignment using existing gene anotation
AuthorIvan Krpelnik
MentorMile Šikić (mentor)
Committee memberMile Šikić (predsjednik povjerenstva)
Committee memberKrešimir Križanović (član povjerenstva)
Committee memberRobert Vaser (član povjerenstva)
GranterUniversity of Zagreb
Faculty of Electrical Engineering and Computing
Zagreb
Defense date and country2016-07-11, Croatia
Scientific / art field,
discipline and subdiscipline		TECHNICAL SCIENCES
Computing
Abstract
RNA sekvenciranje je metoda za analizu transkriptoma. Analizom transkriptoma u nekom trenutku dobivamo uvid u stanje organizma i mogućnost identificiranja regija genoma koje su odgovorne za različite funkcije. U ovom radu je prikazano proširenje alata u svrhu poravnanja RNA očitanja na poznate gene. Osim toga, opisani su osnovni mehanizmi u sekvenciranju nanoporama, te neke druge tehnologije korištene za sekvenciranje i poravnanje. Dan je i pregled formata datoteka koje su korištene za spremanje anotacija eksonski regija, spremanje genoma i transkriptoma i spremanje podataka o poravnanjima.
Abstract (english)
RNA sequencing is a method used for transcriptome analysis. Transcriptome analysis provides us with insight into the state of cells. There is a possibility of identifying regions of a genome in order to determine which regions are responsible for which functions and which regions are active in a state of disease. This thesis describes an upgrade to alignment tool that should make alignment of RNA reads using existing gene annotation possible. Besides the mentioned upgrade, thesis describes different technologies used in sequencing, other alignment tools and file formats used to store information about genome and transcriptome.
Keywords
Keywords (english)
Languagecroatian
URN:NBNurn:nbn:hr:168:396403
Study programmeTitle: Computing
Study programme type: university
Study level: undergraduate
Academic / professional title: sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva (sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva)
Type of resourceText
File originBorn digital
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Created on2018-02-06 09:57:22