Aplikacija za pohranu bioinformatičkih podataka u sustavu PostgreSQL

undergraduate thesis

• Title (english): Application for Storing Bioinformatics Data Using PostgreSQL
• Author: Daniel Ranogajec
• Mentor: Krešimir Križanović (mentor)
• Committee member: Krešimir Križanović (predsjednik povjerenstva)
• Committee member: Mile Šikić (član povjerenstva)
• Committee member: Josip Marić (član povjerenstva)
• Granter: University of Zagreb; Faculty of Electrical Engineering and Computing; Zagreb
• Defense date and country: 2021-07-02, Croatia
• Scientific / art field, discipline and subdiscipline: TECHNICAL SCIENCES; Computing

Abstract

U sklopu završnog rada napravljena je aplikacija u kojoj se mogu pretraživati orga-
nizmi i pregledavati podaci o istima. Organizmima se dodatno mogu spremati i podaci
o genima te sekvence referentnih genoma koje se pohranjuju kao FASTA datoteke na
disku. Završni rad temelji se na dva dijela: baza podataka i aplikacija. U bazi podataka
pohranjeni su svi podaci o organizmima dohvaćeni iz NCBI-eve (Nacionalni centar za
biotehnološke informacije) biblioteke, a putem aplikacije se ti isti podaci prikazuju.
Za implementaciju baze podataka korišten je PostgreSQL sustav, a sama aplikacija je
programirana u jeziku Java uz pomoć Swing biblioteke.

Abstract (english)

In this thesis an application was made in which organisms can be searched and its data
can be viewed. Organisms can additionally store gene data and sequences of reference
genomes which are stored as FASTA files on the disk. This thesis is based on two
parts: database and application. The database contains all data on organisms retrieved
from the NCBI (National Center for Biotechnology Information) library, and the same
data is displayed via the application.
For implementation of database PostgreSQL system was used, and the applicaion itself
was programmed in in the Java language with the help of the Swing library.

• Keywords: bioinformatika; organizam; gen; genom; FASTA; Java; Swing; PostgreSQL
• Keywords (english): bioinformatics; organism; gene; genome; FASTA; Java; Swing; PostgreSQL
• Language: croatian
• URN:NBN: urn:nbn:hr:168:672560
• Study programme: Title: Computing; Study programme type: university; Study level: undergraduate; Academic / professional title: sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva (sveučilišni/a prvostupnik/ prvostupnica (baccalaureus/baccalaurea) inženjer/inženjerka računarstva)
• Type of resource: Text
• File origin: Born digital
• Access conditions: Closed access
• Created on: 2023-01-14 21:32:01